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| Registros recuperados : 34 | |
| 1. |  | STAFUZZA, N. B.; CAETANO, A. R.; AMARAL, M. E. J. Mapeamento RH dos genes APOM, BDA20 e CRABP2 no genoma bovino. In: CONGRESSO BRASILEIRO DE GENÉTICA, 51., 2005, Águas de Lindóia, SP. A era da genômica: da bioestatística à bioinformática: anais. Ribeirão Preto, SP: Sociedade Brasileira de Genética, 2005. p. 194.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 4. | | VENTURINI, G. C.; STAFUZZA, N. B.; CARDOSO, D. F.; BALDI, F.; LEDUR, M. C.; DANTAS, J. de O.; EL FARO, L.; MUNARI, D. P. Association between ACTA1 candidate gene and performance, organs and carcass traits in broilers. Poultry Science, 16 out. 2015.| Biblioteca(s): Embrapa Suínos e Aves. |
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| 5. | | GRUPIONI, N. V.; STAFUZZA, N. B.; CARVAJAL, A. B.; IBELLI, A. M. G.; PEIXOTO, J. de O.; LEDUR, M. C.; MUNARI, D. P. Association of RUNX2 and TNFSF11 genes with production traits in a paternal broiler line. Genetics and Molecular Research, v. 16, n.1, 2017.| Biblioteca(s): Embrapa Suínos e Aves. |
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| 6. | | PERIPOLLI, E.; STAFUZZA, N. B.; MACHADO, M. A.; PANETTO, J. C. do C.; EGITO, A. A. do; BALDI, F.; SILVA, M. V. G. B. Assessment of copy number variants in three Brazilian locally adapted cattle breeds using whole-genome re-sequencing data. Animal Genetics, v. 54, n. 3, p. 254-270, 2023.| Biblioteca(s): Embrapa Gado de Leite. |
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| 7. | | RODRIGUES FILHO, E. A.; STAFUZZA, N. B.; CAETANO, A. R.; GILL, C. A.; RIGGS, P. K.; WOMACK, J. E.; AMARAL, M. E. J. Mapping MHC genes in River Buffalo. In: PINARD, M. H.; GAY, C.; PASTORET, P. P.; DODET, B. (Ed.). Animal genomics for animal health. Basel: Karger, 2008. p. 343-346. (Developments in biologicals, v. 132)| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 8. | | FREITAS, L. A. de; GRUPIONI, N. V.; SAVEGNAGO, R. P.; STAFUZZA, N. B.; FIGUEIREDO, E. A. P. de; SCHMIDT, G. S.; LEDUR, M. C.; MUNARI, D. P. Non-hierarchical cluster analysis for body weight, age at first egg, egg production and egg weight in a laying hen strain. In: INTERNATIONAL MEETING OF ADVANCES IN ANIMAL SCIENCE, 2016, Jaboticabal. Posters presentations... Jabotical: PPGZ Unesp, 2016.| Biblioteca(s): Embrapa Suínos e Aves. |
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| 9. | | BRUNES, L. C.; BALDI, F.; LOPES, F. B.; LOBO, R. B.; ESPIGOLAN, R.; COSTA, M. F. O. e; STAFUZZA, N. B.; MAGNABOSCO, C. de U. Weighted single-step genome-wide association study and pathway analyses for feed efficiency traits in Nellore cattle. Journal of Animal Breeding and Genetics, v. 138, n. 1, p. 23-44, Jan. 2021.| Biblioteca(s): Embrapa Arroz e Feijão; Embrapa Cerrados. |
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| 10. | | PERIPOLLI, E.; CHIAIA, H. L. J.; BERTON, M. P.; KLUSKA, S.; STAFUZZA, N. B.; MUNARI, D. P.; PANETTO, J. C. do C.; MACHADO, M. A.; VENTURA, R. V.; BALDI, F.; SILVA, M. V. G. B. Ilhas de homozigose para identificação de genes relacionados com características de importância econômica na pecuária leiteira em bovinos da raça Gir (Bos primigenius indicus) In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 12., 2017, Ribeirão Preto. Anais... Ribeirão Preto: SBMA, 2017. 3 p.| Biblioteca(s): Embrapa Gado de Leite. |
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| 11. | | CRUZ, V. A. R. da; SCHENKEL, F. S.; SAVEGNAGO, R. P.; GRUPIONI, N. V.; STAFUZZA, N. B.; SARGOZAEL, M.; IBELLI, A. M. G.; PEIXOTO, J. de O.; LEDUR, M. C.; MUNARI, D. P. Association of apolipoprotein B and adiponectin receptor 1 genes with carcass, bone integrity and performance traits in a paternal broiler Line. Plos One, v. 10, n.8, 2015.| Biblioteca(s): Embrapa Suínos e Aves. |
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| 12. | | SBARDELLA, A. P; FONSECA, I.; WELLER, M. A. DEL C. A.; STAFUZZA, N. B.; OLIVEIRA, J. R.; WATANABE, R. N.; COSTA, R, M. da; CARVAJAL, A. B.; SILVA, M. V. G. B.; MARTINS, M. F.; MUNARI, D. P. Avaliação de abordagens estatísticas para análise da expressão gênica diferencial em dados reais de RNA-seq In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 12., 2017, Ribeirão Preto. Anais... Ribeirão Preto: SBMA, 2017. 3 p.| Biblioteca(s): Embrapa Gado de Leite. |
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| 13. | | SBARDELLA, A. P.; FONSECA, I.; WELLER, M. M. D. C. A.; STAFUZZA, N. B.; OLIVEIRA, J. R.; WATANABE, R. N.; COSTA, R. M. da; CARVAJAL, A. B.; SILVA, M. V. G. B.; MARTINS, M. F.; MUNARI, D. P. Avaliação de abordagens estatísticas para análise da expressão gênica diferencial em dados reais de RNA-Seq. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 12., 2017, Ribeirão Preto. Anais... Ribeirão Preto: SBMA, 2017.| Biblioteca(s): Embrapa Gado de Leite. |
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| 14. | | PERIPOLLI, E.; STAFUZZA, N. B.; MUNARI, D. P.; LIMA, A. L. F.; IRGANG, R.; MACHADO, M. A.; PANETTO, J. C. do C.; VENTURA, R. V.; BALDI, F.; SILVA, M. V. G. B. Assessment of runs of homozygosity islands and estimates of genomic inbreeding in Gyr (Bos indicus) dairy cattle. BMC Genomics, v. 19, n. 34, 2018. 13 p.| Biblioteca(s): Embrapa Gado de Leite. |
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| 15. | | VERARDO, L. L.; STAFUZZA, N. B.; MUNARI, D. P.; ZERLOTINI NETO, A.; CHUD, T. C. S.; GARRICK, D. J.; COLE, J. B.; PANETTO, J. C. do C.; MACHADO, M. A.; MARTINS, M. F.; SILVA, M. V. G. B. A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 11., 2018, Auckland. Proceedings... [S.l.: s.n.], 2018.| Biblioteca(s): Embrapa Gado de Leite. |
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| 16. | | VERARDO, L. L.; STAFUZZA, N. B.; MUNARI, D. P.; ZERLOTINI NETO, A.; CHUD, T. C. S.; GARRICK, D. J.; COLE, J. B.; PANETTO, J. C. do C.; MACHADO, M. A.; MARTINS, M. F.; SILVA, M. V. G. B. A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 11., 2018, Auckland. Proceedings... [S.l.: s.n.], 2018. 6 p. Na publicação: A. Zerlotini, J. C. C. Panetto. WCGALP 2018.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 17. | | STAFUZZA, N. B.; SILVA, R. M. de O.; PERIPOLLI, E.; BEZERRA, L. A. F.; LOBO, R. B.; MAGNABOSCO, C. de U.; DI CROCE, F.; OSTERSTOCK, J.; MUNARI, D. P.; LOURENCO, D. A. L.; BALDI, F. Genome-wide association study provides insights into genes related with horn development in Nelore beef cattle. PLoS ONE, v. 13, n. 8, e0202978, August 30, 2018.| Biblioteca(s): Embrapa Cerrados. |
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| 18. | | RAGOGNETTI, B. do N. N; STAFUZZA, N. B.; SILVA, T. B. R. da; CHUD, T. C. S.; GRUPIONI, V. A. R.; CRUZ, V. A. R.; DANTAS, J. de O.; NONES, K.; LEDUR, M. C.; MUNARI, D. P. Genetic parameters and mapping quantitative trait loci associated with tibia traits in broilers. Genetics and Molecular Research, v. 14, n. 4, p. 17544-17554, 2015.| Biblioteca(s): Embrapa Suínos e Aves. |
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| 19. | | ZERLOTINI NETO, A.; STAFUZZA, N. B.; LOBO, F. P.; YAMAGISHI, M. E. B.; CHUD, T. C. S.; CAETANO, A. R.; MUNARI, D. P.; GARRICK, D. J.; MACHADO, M. A.; MARTINS, M. F.; CARVALHO, M. R.; SILVA, M. V. G. B. Detection of potential genetic variants affecting gene function in Guzerat cattle. In: INTERNATIONAL CONFERENCE OF THE AB3C, 12., 2016, Belo Horizonte. Proceedings... [S.l.]: AB3C, 2016. p. 47. X-meeting 2016.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 20. | | ZERLOTINI NETO, A.; STAFUZZA, N. B.; LOBO, F. P.; YAMAGISHI, M. E. B.; CHUD, T. C. S.; CAETANO, A. R.; MUNARI, D. P.; GARRICK, D. J.; MACHADO, M. A.; MARTINS, M. F.; CARVALHO, M. R.; SILVA, M. V. G. B. Detection of potential genetic variants affecting gene function in Guzerat cattle. In: INTERNATIONAL CONFERENCE OF THE AB3C, 12., 2016, Belo Horizonte. Proceedings... [S.l.]: AB3C, 2016. p. 47. X-meeting 2016.| Biblioteca(s): Embrapa Agricultura Digital. |
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| Registros recuperados : 34 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Gado de Leite. |
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Data corrente: |
10/02/2023 |
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Data da última atualização: |
14/06/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
PERIPOLLI, E.; STAFUZZA, N. B.; MACHADO, M. A.; PANETTO, J. C. do C.; EGITO, A. A. do; BALDI, F.; SILVA, M. V. G. B. |
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Afiliação: |
ELISA PERIPOLLI, Universidade Estadual Paulista; NEDENIA BONVINO STAFUZZA, Centro de Pesquisa em Bovinos de Corte; MARCO ANTONIO MACHADO, CNPGL; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; ANDREA ALVES DO EGITO, CNPGC; FERNANDO BALDI, Universidade Estadual Paulista; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL. |
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Título: |
Assessment of copy number variants in three Brazilian locally adapted cattle breeds using whole-genome re-sequencing data. |
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Ano de publicação: |
2023 |
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Fonte/Imprenta: |
Animal Genetics, v. 54, n. 3, p. 254-270, 2023. |
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DOI: |
https://doi.org/10.1111/age.13298 |
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Idioma: |
Inglês |
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Conteúdo: |
Further characterization of genetic structural variations should strongly focus on small and endangered local breeds given their role in unraveling genes and structural variants underlying selective pressures and phenotype variation. A comprehensive genome-wide assessment of copy number variations (CNVs) based on whole-genome re-sequencing data was performed on three Brazilian locally adapted cattle breeds (Caracu Caldeano, Crioulo Lageano, and Pantaneiro) using the ARS-UCD1.2 genome assembly. Data from 36 individuals with an average coverage depth of 14.07× per individual was used. A total of 24?945 CNVs were identified distributed among the breeds (Caracu Caldeano = 7285, Crioulo Lageano = 7297, and Pantaneiro = 10 363). Deletion events were 1.75?2.07-fold higher than duplications, and the total length of CNVs is composed mostly of a high number of segments between 10 and 30?kb. CNV regions (CNVRs) are not uniformly scattered throughout the genomes (n = 463), and 105 CNVRs were found overlapping among the studied breeds. Functional annotation of the CNVRs revealed variants with high consequence on protein sequence harboring relevant genes, in which we highlighted the BOLA-DQB, BOLA-DQA5, CD1A, ?-defensins, PRG3, and ULBP21 genes. Enrichment analysis based on the gene list retrieved from the CNVRs disclosed over-represented terms (p?MenosFurther characterization of genetic structural variations should strongly focus on small and endangered local breeds given their role in unraveling genes and structural variants underlying selective pressures and phenotype variation. A comprehensive genome-wide assessment of copy number variations (CNVs) based on whole-genome re-sequencing data was performed on three Brazilian locally adapted cattle breeds (Caracu Caldeano, Crioulo Lageano, and Pantaneiro) using the ARS-UCD1.2 genome assembly. Data from 36 individuals with an average coverage depth of 14.07× per individual was used. A total of 24?945 CNVs were identified distributed among the breeds (Caracu Caldeano = 7285, Crioulo Lageano = 7297, and Pantaneiro = 10 363). Deletion events were 1.75?2.07-fold higher than duplications, and the total length of CNVs is composed mostly of a high number of segments between 10 and 30?kb. CNV regions (CNVRs) are not uniformly scattered throughout the genomes (n = 463), and 105 CNVRs were found overlapping among the studied breeds. Functional annotation of the CNVRs revealed variants with high consequence on protein sequence harboring relevant genes, in which we highlighted the BOLA-DQB, BOLA-DQA5, CD1A, ?-defensins, PRG3, and ULBP21 genes. Enrichment analysis based on the gene list retrieved from the CNVRs disclosed over-represented terms (p?Mostrar Tudo |
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Palavras-Chave: |
Variação fenotípica. |
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Thesagro: |
Bovino; Gado Crioulo; Genoma; Raça. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1151656/1/Assessment-of-copy-number-variants-in-three-Brazilian.pdf
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Marc: |
LEADER 02604naa a2200265 a 4500
001 2151656
005 2023-06-14
008 2023 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1111/age.13298$2DOI
100 1 $aPERIPOLLI, E.
245 $aAssessment of copy number variants in three Brazilian locally adapted cattle breeds using whole-genome re-sequencing data.$h[electronic resource]
260 $c2023
520 $aFurther characterization of genetic structural variations should strongly focus on small and endangered local breeds given their role in unraveling genes and structural variants underlying selective pressures and phenotype variation. A comprehensive genome-wide assessment of copy number variations (CNVs) based on whole-genome re-sequencing data was performed on three Brazilian locally adapted cattle breeds (Caracu Caldeano, Crioulo Lageano, and Pantaneiro) using the ARS-UCD1.2 genome assembly. Data from 36 individuals with an average coverage depth of 14.07× per individual was used. A total of 24?945 CNVs were identified distributed among the breeds (Caracu Caldeano = 7285, Crioulo Lageano = 7297, and Pantaneiro = 10 363). Deletion events were 1.75?2.07-fold higher than duplications, and the total length of CNVs is composed mostly of a high number of segments between 10 and 30?kb. CNV regions (CNVRs) are not uniformly scattered throughout the genomes (n = 463), and 105 CNVRs were found overlapping among the studied breeds. Functional annotation of the CNVRs revealed variants with high consequence on protein sequence harboring relevant genes, in which we highlighted the BOLA-DQB, BOLA-DQA5, CD1A, ?-defensins, PRG3, and ULBP21 genes. Enrichment analysis based on the gene list retrieved from the CNVRs disclosed over-represented terms (p?<?0.01) strongly associated with immunity and cattle resilience to harsh environments. Additionally, QTL associated with body conformation and dairy-related traits were also unveiled within the CNVRs. These results provide better understanding of the selective forces shaping the genome of such cattle breeds and identify traces of natural selection pressures by which these populations have been exposed to challenging environmental conditions.
650 $aBovino
650 $aGado Crioulo
650 $aGenoma
650 $aRaça
653 $aVariação fenotípica
700 1 $aSTAFUZZA, N. B.
700 1 $aMACHADO, M. A.
700 1 $aPANETTO, J. C. do C.
700 1 $aEGITO, A. A. do
700 1 $aBALDI, F.
700 1 $aSILVA, M. V. G. B.
773 $tAnimal Genetics$gv. 54, n. 3, p. 254-270, 2023.
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